SNP Profiles matching MAN 15/2 [BRA]

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 Key

 1234567891011121314
_Input profile
TTCCCCGTCTGGACCGAGTTAGGGAAAG
1._RUQ_87
TTCCCCGTCCGGACCGAATTAGGGAAAG
2._MAN_15_/2_[BRA]
__CCGTCT_ACCGAGTT__AAAG
3._MAN_15_/2_[BRA]
__CCGTCT_ACCGAGTT__AAAG
4._GC-08-050-1-61
TTCCCCGTCTGGAACGAGTTAGGGAAAG
5._GC-08-050-1-61
TTCCCCGTCTGGAACGAGTTAGGGAAAG
6._GC-08-050-1-61
TTCCCCGTCTGGAACGAGTTAGGGAAAG
7._GC-08-050-1-61
TTCCCCGTCTGGAACGAGTTAGGGAAAG
8._GC-08-050-1-61
TTCCCCGTCTGGAACGAGTTAGGGAAAG
9._GC-08-050-1-61
TTCCCCGTCTGGAACGAGTTAGGGAAAG
10._GC-08-050-1-61
TTCCCCGTCTGGAACGAGTTAGGGAAAG
11._GC-05-055-2-06
TTCCCCGTCTGGAACGAGTTAGGGAAAG
12._GC-05-055-2-06
TTCCCCGTCTGGAACGAGTTAGGGAAAG
13._GC-05-055-2-06
TTCCCCGTCTGGAACGAGTTAGGGAAAG
14._GC-05-055-2-06
TTCCCCGTCTGGAACGAGTTAGGGAAAG
15._GC-05-055-2-06
TTCCCCGTCTGGAACGAGTTAGGGAAAG
16._GC-05-148-4-01
TTCCCCGTCTGGAACGAGTTAGGGAAAG
17._GC-05-148-4-01
TTCCCCGTCTGGAACGAGTTAGGGAAAG
18._GC-05-148-4-01
TTCCCCGTCTGGAACGAGTTAGGGAAAG
19._GC-05-148-4-01
TTCCCCGTCTGGAACGAGTTAGGGAAAG
20._GC-05-072-2-23
TTCCCCGTCCGGAACGAATTAGGGAAAG
21._GC-05-072-2-23
TTCCCCGTCCGGAACGAATTAGGGAAAG
22._GC-05-072-2-23
TTCCCCGTCCGGAACGAATTAGGGAAAG
23._GC-05-072-2-23
TTCCCCGTCCGGAACGAATTAGGGAAAG
24._GC-05-072-2-23
TTCCCCGTCCGGAACGAATTAGGGAAAG
25._GC-05-148-4-01
TTCCCCGTCTGGAACGAGTTAGGGAAAG
26._LP_1_/41_[POU]
__CCGTCT_AACGAGTT__AAAG
27._LP_1_/41_[POU]
__CCGTCT_AACGAGTT__AAAG
28._LP_1_/41_[POU]
__CCGTCT_AACGAGTT__AAAG
29._LP_1_/41_[POU]
__CCGTCT_AACGAGTT__AAAG
30._LP_1_/41_[POU]
__CCGTCT_AACGAGTT__AAAG
31._LP_1_/41_[POU]
__CCGTCT_AACGAGTT__AAAG
32._LP_1_/41_[POU]
__CCGTCT_AACGAGTT__AAAG
33._LP_1_/41_[POU]
__CCGTCT_AACGAGTT__AAAG
34._LP_1_/41_[POU]
__CCGTCT_AACGAGTT__AAAG
35._LP_1_/41_[POU]
__CCGTCT_AACGAGTT__AAAG
36._RUQ_86
__CCGTCT_ACCGAGTT__AAAG
37._MAN_15_/2_[BRA]
__CCGTCC_AACGAATT__AAAG
38._MAN_15_/2_[BRA]
__CCGTCC_AACGAATT__AAAG
39._MAN_15_/2_[BRA]
__CCGTCC_AACGAATT__AAAG
40._MAN_15_/2_[BRA]
__CCGTCC_AACGAATT__AAAG
41._MAN_15_/2_[BRA]
__CCGTCC_AACGAATT__AAAG
 1516171819202122232425262728
_Input profile
ACCCGTCGACCTCCCCGGAGTTACGGCC
1._RUQ_87
ACCCGTCGACCTCCCCGGAGTTACGGCC
2._MAN_15_/2_[BRA]
ACCCGTGGAC_CC_GG___GG_
3._MAN_15_/2_[BRA]
ACCCGTGGAC_CC_GG___GG_
4._GC-08-050-1-61
ACCCGTGGACCTCCCTGGAGTTACGGCC
5._GC-08-050-1-61
ACCCGTGGACCTCCCTGGAGTTACGGCC
6._GC-08-050-1-61
ACCCGTGGACCTCCCTGGAGTTACGGCC
7._GC-08-050-1-61
ACCCGTGGACCTCCCTGGAGTTACGGCC
8._GC-08-050-1-61
ACCCGTGGACCTCCCTGGAGTTACGGCC
9._GC-08-050-1-61
ACCCGTGGACCTCCCTGGAGTTACGGCC
10._GC-08-050-1-61
ACCCGTGGACCTCCCTGGAGTTACGGCC
11._GC-05-055-2-06
ACCCGTGGACCTCCCTGGAGTTACGGCC
12._GC-05-055-2-06
ACCCGTGGACCTCCCTGGAGTTACGGCC
13._GC-05-055-2-06
ACCCGTGGACCTCCCTGGAGTTACGGCC
14._GC-05-055-2-06
ACCCGTGGACCTCCCTGGAGTTACGGCC
15._GC-05-055-2-06
ACCCGTGGACCTCCCTGGAGTTACGGCC
16._GC-05-148-4-01
ACCCGTGGACCTCCCTGGAGTTACGGCC
17._GC-05-148-4-01
ACCCGTGGACCTCCCTGGAGTTACGGCC
18._GC-05-148-4-01
ACCCGTGGACCTCCCTGGAGTTACGGCC
19._GC-05-148-4-01
ACCCGTGGACCTCCCTGGAGTTACGGCC
20._GC-05-072-2-23
ACCCGTCGACCTCCCCGGAGTTACGGCC
21._GC-05-072-2-23
ACCCGTCGACCTCCCCGGAGTTACGGCC
22._GC-05-072-2-23
ACCCGTCGACCTCCCCGGAGTTACGGCC
23._GC-05-072-2-23
ACCCGTCGACCTCCCCGGAGTTACGGCC
24._GC-05-072-2-23
ACCCGTCGACCTCCCCGGAGTTACGGCC
25._GC-05-148-4-01
ACCCGTGGACCTCCCTGGAGTTACGG_
26._LP_1_/41_[POU]
ACCCGTGGAC_CC_GG___GG_
27._LP_1_/41_[POU]
ACCCGTGGAC_CC_GG___GG_
28._LP_1_/41_[POU]
ACCCGTGGAC_CC_GG___GG_
29._LP_1_/41_[POU]
ACCCGTGGAC_CC_GG___GG_
30._LP_1_/41_[POU]
ACCCGTGGAC_CC_GG___GG_
31._LP_1_/41_[POU]
ACCCGTGGAC_CC_GG___GG_
32._LP_1_/41_[POU]
ACCCGTGGAC_CC_GG___GG_
33._LP_1_/41_[POU]
ACCCGTGGAC_CC_GG___GG_
34._LP_1_/41_[POU]
ACCCGTGGAC_CC_GG___GG_
35._LP_1_/41_[POU]
ACCCGTGGAC_CC_GG___GG_
36._RUQ_86
ACCCGTGGAC_CC_GG___GG_
37._MAN_15_/2_[BRA]
ACCCGTCGAC_CC_GG___GG_
38._MAN_15_/2_[BRA]
ACCCGTCGAC_CC_GG___GG_
39._MAN_15_/2_[BRA]
ACCCGTCGAC_CC_GG___GG_
40._MAN_15_/2_[BRA]
ACCCGTCGAC_CC_GG___GG_
41._MAN_15_/2_[BRA]
ACCCGTCGAC_CC_GG___GG_
 293031323334353637383940  
_Input profile
TTAACCCTGGAGTTCTCTCCCGAAX_XX_X
1._RUQ_87
TTAACCCTGGAGTTCTCTCCCGAAX_XX_X
2._MAN_15_/2_[BRA]
CTAA_CT_____CCCGAAX_XX_X
3._MAN_15_/2_[BRA]
CTAA_CT_____CCCGAAX_XX_X
4._GC-08-050-1-61
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
5._GC-08-050-1-61
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
6._GC-08-050-1-61
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
7._GC-08-050-1-61
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
8._GC-08-050-1-61
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
9._GC-08-050-1-61
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
10._GC-08-050-1-61
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
11._GC-05-055-2-06
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
12._GC-05-055-2-06
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
13._GC-05-055-2-06
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
14._GC-05-055-2-06
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
15._GC-05-055-2-06
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
16._GC-05-148-4-01
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
17._GC-05-148-4-01
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
18._GC-05-148-4-01
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
19._GC-05-148-4-01
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
20._GC-05-072-2-23
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
21._GC-05-072-2-23
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
22._GC-05-072-2-23
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
23._GC-05-072-2-23
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
24._GC-05-072-2-23
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
25._GC-05-148-4-01
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
26._LP_1_/41_[POU]
CTAA_CT_____CCCGAAX_XX_X
27._LP_1_/41_[POU]
CTAA_CT_____CCCGAAX_XX_X
28._LP_1_/41_[POU]
CTAA_CT_____CCCGAAX_XX_X
29._LP_1_/41_[POU]
CTAA_CT_____CCCGAAX_XX_X
30._LP_1_/41_[POU]
CTAA_CT_____CCCGAAX_XX_X
31._LP_1_/41_[POU]
CTAA_CT_____CCCGAAX_XX_X
32._LP_1_/41_[POU]
CTAA_CT_____CCCGAAX_XX_X
33._LP_1_/41_[POU]
CTAA_CT_____CCCGAAX_XX_X
34._LP_1_/41_[POU]
CTAA_CT_____CCCGAAX_XX_X
35._LP_1_/41_[POU]
CTAA_CT_____CCCGAAX_XX_X
36._RUQ_86
CTAA_CT_____CCCGAGX_XX_X
37._MAN_15_/2_[BRA]
CTAA_CT_____CCCGAAX_XX_X
38._MAN_15_/2_[BRA]
CTAA_CT_____CCCGAAX_XX_X
39._MAN_15_/2_[BRA]
CTAA_CT_____CCCGAAX_XX_X
40._MAN_15_/2_[BRA]
CTAA_CT_____CCCGAAX_XX_X
41._MAN_15_/2_[BRA]
CTAA_CT_____CCCGAAX_XX_X

Input profile: MAN_15_/2_[BRA] RUQ_86

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._MAN_15_/60_[BRA] RUQ_87

97.5 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._MAN_15_/2_[BRA]

95.7 %
23 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: C0297
 Dapeng Zhang, 2016

3._MAN_15_/2_[BRA]

95.7 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N3/476 T2
 Dapeng Zhang, 2016

4._IMC_119 GC-08-050-1-61

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

5._IMC_119 GC-08-050-1-61

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

6._IMC_119 GC-08-050-1-61

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

7._IMC_119 GC-08-050-1-61

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

8._IMC_119 GC-08-050-1-61

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

9._IMC_119 GC-08-050-1-61

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

10._IMC_119 GC-08-050-1-61

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

11._LP_1_/41_[POU] GC-05-055-2-06

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

12._LP_1_/41_[POU] GC-05-055-2-06

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._LP_1_/41_[POU] GC-05-055-2-06

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

14._LP_1_/41_[POU] GC-05-055-2-06

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

15._LP_1_/41_[POU] GC-05-055-2-06

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

16._LP_1_/41_[POU] GC-05-148-4-01

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

17._LP_1_/41_[POU] GC-05-148-4-01

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

18._LP_1_/41_[POU] GC-05-148-4-01

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

19._LP_1_/41_[POU] GC-05-148-4-01

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

20._MAN_15_/2_[BRA] GC-05-072-2-23

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

21._MAN_15_/2_[BRA] GC-05-072-2-23

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

22._MAN_15_/2_[BRA] GC-05-072-2-23

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

23._MAN_15_/2_[BRA] GC-05-072-2-23

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

24._MAN_15_/2_[BRA] GC-05-072-2-23

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

25._LP_1_/41_[POU] GC-05-148-4-01

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

26._LP_1_/41_[POU]

93.5 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5401 2 > FP
 Dapeng Zhang, 2016

27._LP_1_/41_[POU]

93.5 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5401 1 > FP
 Dapeng Zhang, 2016

28._LP_1_/41_[POU]

93.5 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5401 5
 Dapeng Zhang, 2016

29._LP_1_/41_[POU]

93.5 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5401 4
 Dapeng Zhang, 2016

30._LP_1_/41_[POU]

93.5 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5401 3
 Dapeng Zhang, 2016

31._LP_1_/41_[POU]

93.5 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5206 3 > FP
 Dapeng Zhang, 2016

32._LP_1_/41_[POU]

93.5 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5206 1 > FP
 Dapeng Zhang, 2016

33._LP_1_/41_[POU]

93.5 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5206 5
 Dapeng Zhang, 2016

34._LP_1_/41_[POU]

93.5 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5206 4
 Dapeng Zhang, 2016

35._LP_1_/41_[POU]

93.5 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5206 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

36._MAN_15_/2_[BRA] RUQ_86

93.5 %
23 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
 Dapeng Zhang, 2016

37._MAN_15_/2_[BRA]

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 5 > FP
 Dapeng Zhang, 2016

38._MAN_15_/2_[BRA]

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 3 > FP
 Dapeng Zhang, 2016

39._MAN_15_/2_[BRA]

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 2 > FP
 Dapeng Zhang, 2016

40._MAN_15_/2_[BRA]

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 1 > FP
 Dapeng Zhang, 2016

41._MAN_15_/2_[BRA]

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP469 15TcSNP529
16TcSNP534 17TcSNP560 18TcSNP577 19TcSNP591 20TcSNP602
21TcSNP619 22TcSNP702 23TcSNP723 24TcSNP731 25TcSNP799
26TcSNP823 27TcSNP872 28TcSNP878 29TcSNP891 30TcSNP998
31TcSNP999 32TcSNP1060 33TcSNP1063 34TcSNP1111 35TcSNP1126
36TcSNP1309 37TcSNP1439 38TcSNP1442 39TcSNP1458 40TcSNP1484